Title Advances in bioinformatics and computational biology : 12th Brazilian Symposium on Bioinformatics, BSB 2019, Fortaleza, Brazil, October 7-10, 2019, Revised selected papers / Luis Kowada, Daniel de Oliveira (eds.)

Published Cham : Springer, 2020

Click on the following:
Springer Computer Science eBooks
Springer eBooks

Copies

Description 1 online resource (137 pages) Series Lecture Notes in Computer Science ; 11347 Lecture notes in bioinformatics LNCS Sublibrary, SL 8, Bioinformatics Lecture notes in computer science ; 11347. Lecture notes in computer science. Lecture notes in bioinformatics. LNCS sublibrary. SL 8, Bioinformatics. Contents Intro -- Preface -- Organization -- Contents -- Full Papers -- On Clustering Validation in Metagenomics Sequence Binning -- 1 Introduction -- 2 On Clustering Metagenomic Data -- 3 Clusters Validation -- 4 Quantitative Validation (Internal Indexes) -- 5 Qualitative Validation -- 6 Experimental Study -- 6.1 Data Sets -- 6.2 Methods -- 7 Results and Discussion -- 7.1 Quantitative Validation -- 7.2 Qualitative Validation -- 8 Conclusion -- References -- Genome Assembly Using Reinforcement Learning -- 1 Introduction -- 2 Background -- 2.1 ML-Based Genome Assembly -- 2.2 RL-Based Auto-assembly 3 Materials and Methods -- 3.1 Read Simulation -- 3.2 Overlapping Scores and Ground Truth Acquisition -- 3.3 RL-Based Auto-Assembly Implementation -- 4 Results and Discussion -- 5 Conclusion -- References -- GeNWeMME: A Network-Based Computational Method for Prioritizing Groups of Significant Related Genes in Cancer -- 1 Introduction -- 2 Related Work -- 3 Biological Concepts -- 4 GeNWeMME Method -- 5 Results -- 6 Conclusion -- References -- MDR SurFlexDock: A Semi-automatic Webserver for Discrete Receptor-Ensemble Docking -- 1 Background -- 2 Implementation -- 2.1 Web Server -- 2.2 Pipeline 3 Results and Discussion -- 4 Perspectives -- References -- Venom Gland Peptides of Arthropods from the Brazilian Cerrado Biome Unveiled by Transcriptome Analysis -- 1 Introduction -- 2 Methods -- 2.1 Filtering and Assembly -- 2.2 Annotation -- 3 Results and Discussion -- 4 Conclusion -- References -- Block-Interchange Distance Considering Intergenic Regions -- 1 Introduction -- 2 Formal Definition of Intergenic Regions -- 3 The Weighted Cycle Graph Structure -- 4 The Block-Interchange Problem -- 5 A 2-Approximation Algorithm -- 6 Considering Insertions and Deletions -- 7 Conclusion -- References K-mer Mapping and RDBMS Indexes -- 1 Introduction -- 2 Related Work -- 3 Index Structures -- 4 Results and Discussion -- 4.1 The Impact of k Value in the Processing Time -- 5 Conclusions -- References -- A Clustering Approach to Identify Candidates to Housekeeping Genes Based on RNA-seq Data -- 1 Introduction -- 2 Related Work -- 3 Methods -- 3.1 Proposed Pipeline for HKG Identification -- 3.2 Data Processing -- 3.3 Clustering -- 3.4 HKGs Candidates Identification -- 4 Results and Discussion -- 5 Conclusion -- References -- Predicting Cancer Patients' Survival Using Random Forests 1 Introduction -- 2 Exploring the Database -- 3 Machine Learning Application -- 3.1 Random Forests -- 3.2 Preprocessing -- 3.3 Training and Testing -- 4 Conclusion -- References -- Extended Abstracts -- Searching in Silico Novel Targets for Specific Coffee Rust Disease Control -- 1 Introduction -- 2 Methods -- 3 Results and Discussion -- 4 Conclusion -- References -- A Domain Framework Approach for Quality Feature Analysis of Genome Assemblies -- 1 The Quality Problem of Assemblies -- 2 Framework Approach -- 2.1 Requirements -- 2.2 Architecture -- 2.3 Extending Abstract Classes Summary This book constitutes the refereed proceedings of the Brazilian Symposium on Bioinformatics, BSB 2019, held in Fortaleza, Brazil in October 2019. The 9 revised full papers and 3 short papers were carefully reviewed and selected from 22 submissions. The papers address a broad range of current topics in computational biology and bioinformatics Notes 3 Main Contributions Bibliography Includes bibliographical references and author index Notes Print version record Subject Bioinformatics -- Congresses Computational biology -- Congresses Bioinformatics Computational biology Genre/Form Electronic books proceedings (reports) Conference papers and proceedings Conference papers and proceedings. Actes de congrès. Form Electronic book Author Kowada, Luis Oliveira, Daniel de ISBN 9783030464172 3030464172

Other Titles BSB 2019

  Permalink