| Description |
1 online resource (xvii, 580 pages) : illustrations |
| Series |
Lecture notes in computer science, 1611-3349 ; 6577. Lecture notes in bioinformatics |
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LNCS sublibrary. SL 8, Bioinformatics |
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Lecture notes in computer science ; 6577. 0302-9743
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Lecture notes in computer science. Lecture notes in bioinformatics.
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LNCS sublibrary. SL 8, Bioinformatics.
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| Contents |
Machine generated contents note: Bacterial Community Reconstruction Using Compressed Sensing / Or Zuk -- Constrained De Novo Sequencing of Peptides with Application to Conotoxins / Marshall Bern -- Metabolic Network Analysis Demystified / Bonnie Berger -- Causal Reasoning on Biological Networks: Interpreting Transcriptional Changes (Extended Abstract) / Enoch Huang -- Hapsembler: An Assembler for Highly Polymorphic Genomes / Michael Brudno -- Discovery and Characterization of Chromatin States for Systematic Annotation of the Human Genome / Manolis Kellis -- Disease Gene Prioritization Based on Topological Similarity in Protein-Protein Interaction Networks / Mehmet Koyuturk -- Understanding Gene Sequence Variation in the Context of Transcription Regulation in Yeast / Ron Shamir -- Identifying Branched Metabolic Pathways by Merging Linear Metabolic Pathways / Lydia E. Kavraki -- Probabilistic Model For Sequence Alignment with Context-Sensitive Indels / Mathieu Blanchette -- Simultaneous Structural Variation Discovery in Multiple Paired-End Sequenced Genomes / S. Cenk Sahinalp -- Variable Selection through Correlation Sifting / Nebojsa Jojic -- Weighted Genomic Distance Can Hardly Impose a Bound on the Proportion of Transpositions / Max A. Alekseyev -- PSAR: Measuring Multiple Sequence Alignment Reliability by Probabilistic Sampling (Extended Abstract) / Jian Ma -- Pedigree Reconstruction Using Identity by Descent / Eran Halperin -- Quantitative Model of Glucose Signaling in Yeast Reveals an Incoherent Feed Forward Loop Leading to a Specific, Transient Pulse of Transcription / Michael R. Brent -- Inferring Mechanisms of Compensation from E-MAP and SGA Data Using Local Search Algorithms for Max Cut / Benjamin J. Hescott -- IsoLasso: A LASSO Regression Approach to RNA-Seq Based Transcriptome Assembly (Extended Abstract) / Tao Jiang |
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Note continued: Haplotype Reconstruction in Large Pedigrees with Many Untyped Individuals / Jing Li -- Learning Cellular Sorting Pathways Using Protein Interactions and Sequence Motifs / Robert F. Murphy -- Geometric Arrangement Algorithm for Structure Determination of Symmetric Protein Homo-oligomers from NOEs and RDCs / Bruce R. Donald -- Paired de Bruijn Graphs: A Novel Approach for Incorporating Mate Pair Information into Genome Assemblers / Pavel Pevzner -- Optimization-Based Sampling Scheme for Phylogenetic Trees / Russell Schwartz -- Multiplex De Novo Sequencing of Peptide Antibiotics / Pavel A. Pevzner -- Fractal and Transgenerational Genetic Effects on Phenotypic Variation and Disease Risk (Invited Talk) / Joe Nadeau -- AREM: Aligning Short Reads from ChIP-Sequencing by Expectation Maximization / Xiaohui Xie -- Blocked Pattern Matching Problem and Its Applications in Proteomics / Pavel A. Pevzner -- Three-Dimensional Model of the Yeast Genome / C. Anthony Blau -- Optimization of Combinatorial Mutagenesis / Chris Bailey-Kellogg -- Seeing More Is Knowing More: V3D Enables Real-Time 3D Visualization and Quantitative Analysis of Large-Scale Biological Image Data Sets / Fuhui Long -- T-IDBA: A de novo Iterative de Bruijn Graph Assembler for Transcriptome (Extended Abstract) / Francis Y.L. Chin -- Experiment Specific Expression Patterns / Ralf Zimmer -- Geometric Interpretation of Gene Expression by Sparse Reconstruction of Transcript Profiles / Nathan Linial -- Ribosome Flow Model for Analyzing Translation Elongation (Extended Abstract) / Tamir Tuller -- Design of Protein-Protein Interactions with a Novel Ensemble-Based Scoring Algorithm / Bruce R. Donald -- Computing Fragmentation Trees from Metabolite Multiple Mass Spectrometry Data / Sebastian Bocker -- Metric Labeling and Semi-metric Embedding for Protein Annotation Prediction / Carl Kingsford |
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Note continued: Efficient Traversal of Beta-Sheet Protein Folding Pathways Using Ensemble Models / Jerome Waldispuhl -- Optimally Orienting Physical Networks / Roded Sharan -- Opera: Reconstructing Optimal Genomic Scaffolds with High-Throughput Paired-End Sequences / Wing-Kin Sung -- Increasing Power of Groupwise Association Test with Likelihood Ratio Test / Eleazar Eskin -- Conservative Extensions of Linkage Disequilibrium Measures from Pairwise to Multi-loci and Algorithms for Optimal Tagging SNP Selection / Sorin Istrail -- Protein Loop Closure Using Orientational Restraints from NMR Data / Bruce Randall Donald -- De Novo Discovery of Mutated Driver Pathways in Cancer / Benjamin J. Raphael -- Unbiased Adaptive Sampling Algorithm for the Exploration of RNA Mutational Landscapes under Evolutionary Pressure / Yann Ponty -- Nonparametric Combinatorial Sequence Models / Nebojsa Jojic -- Algorithms for MDC-Based Multi-locus Phylogeny Inference / Luay Nakhleh -- Rich Parameterization Improves RNA Structure Prediction / Michal Ziv-Ukelson -- Bayesian Approach for Determining Protein Side-Chain Rotamer Conformations Using Unassigned NOE Data / Bruce R. Donald |
| Summary |
This book constitutes the refereed proceedings of the 15th Annual International Conference on Research in Computational Molecular Biology, RECOMB 2011, held in Vancouver, Canada, in March 2011. The 43 revised full papers were carefully reviewed and selected from 153 submissions. The papers cover a wide range of topics including molecular sequence analysis; recognition of genes and regulatory elements; molecular evolution; gene expression; biological networks; sequencing and genotyping technologies; genomics; population, statistical genetics; systems biology; imaging; computational proteomics; molecular structural biology |
| Bibliography |
Includes bibliographical references and author index |
| Notes |
English |
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Print version record |
| In |
Springer eBooks |
| Subject |
Molecular biology -- Mathematics -- Congresses
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Molecular biology -- Computer simulation -- Congresses
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Computational biology -- Congresses
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Bioinformatics -- Congresses
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Artificial intelligence.
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Software
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Electronic Data Processing
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Artificial Intelligence
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software.
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computer science.
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data processing.
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artificial intelligence.
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Informatique.
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Bioinformatics
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Computational biology
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Molecular biology -- Computer simulation
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Molecular biology -- Mathematics
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| Genre/Form |
proceedings (reports)
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Conference papers and proceedings
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Conference papers and proceedings.
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Actes de congrès.
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| Form |
Electronic book
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| Author |
Bafna, Vineet.
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Sahinalp, Suleyman Cenk.
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| ISBN |
9783642200366 |
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3642200362 |
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3642200354 |
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9783642200359 |
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