| Description |
1 online resource (xvi, 653 pages) : illustrations |
| Contents |
Gene regulation. Session introduction / S. Batzoglou and L. Pachter -- Multiclass cancer classification using gene expression profiling and probabilistic neural networks / D.P. Berrar, C.S. Downes, and W. Dubitzky -- Inferring gene regulatory networks from time-ordered gene expression data of bacillus subtilis using differential equations / M.J.L. de Hoon [and others] -- Genome-wide analysis of bacterial promoter regions / E. Eskin [and others] -- MOPAC: motif finding by preprocessing and agglomerative clustering from microarrays / R. Ganesh, D.A. Siegele, and T.R. Ioerger -- Improved gene selection for classification of microarrays / J. Jaeger, R. Sengupta, and W.L. Ruzzo -- Kernel Cox regression models for linking gene expression profiles to censored survival data / H. Li and Y. Luan -- Extracting conserved gene expression motifs from gene expression data / T.M. Murali and S. Kasif -- Decomposing gene expression into cellular processes / E. Segal, A. Battle, and D. Roller -- Genome, pathway, and interaction bioinformatics. Session Introduction / P. Karp [and others] -- Suitability and utility of computational analysis tools: characterization of erythrocyte parameter variation / R.E. Altenbaugh, K.J. Kauffman, and J.S. Edwards -- Foundations of a query and simulation system for the modeling of biochemical and biological processes / M. Antoniotti [and others] -- Incorporating biological knowledge into evaluation of causal regulatory hypotheses / L. Chrisman [and others] -- Assessment of the reliability of protein-protein interactions and protein function prediction / M. Deng, F. Sun, and T. Chen -- Boundary formation by notch signaling in drosophila multicellular systems: experimental observations and gene network modeling by genomic object net / H. Matsuno [and others] -- Influence of network topology and data collection on network inference / V.A. Smith, E.D. Jarvis, and A.J. Hartemink -- Informatics approaches in structural genomics. Session introduction / S.D. Mooney and P.C. Babbit -- Simultaneous sequence alignment and tree construction using hidden Markov models / R.C. Edgar and K. Sjölander -- Towards discovering structural signatures of protein folds based on logical hidden Markov models / K. Kersting [and others] -- Automated construction of structural motifs for predicting functional sites on protein structures / M.P. Liang, D.L. Brutlag, and R.B. Altman -- Prediction of boundaries between intrinsically ordered and disordered protein regions / P. Radivojac [and others] -- Identifying structural motifs in proteins / R. Singh and M. Saha -- A path planning-based study of protein folding with a case study of hairpin formation in protein G and L / G. Song [and others] -- Profile-profile alignment: a powerful tool for protein structure prediction / N. von Öhsen, I. Sommer, and R. Zimmer -- Protein threading by linear programming / J. Xu [and others] |
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Genome-wide analysis and comparative genomics. Session introduction / L. Wei, I. Dubchak, and V. Solovyev -- Towards identifying lateral gene transfer events / L. Addario-Berry, M. Hallett, and J. Lagergren -- Whole genome human/mouse phylogenetic footprinting of potential transcription regulatory signals / E. Cheremushkin and A. Kel -- MAP: searching large genome databases / T. Kahveci and A. Singh -- Towards the development of computational tools for evaluating phylogenetic network reconstruction methods / L. Nakhleh [and others] -- Identification of regulatory binding sites using minimum spanning trees / V. Olman, D. Xu, and Y. Xu -- Intrasplicing -- analysis of long intron sequences / S. Ott [and others] -- Trajectory clustering: a non-parametric method for grouping gene expression time courses, with applications to mammary development / T.L. Phang [and others] -- Algorithms for multiple genome rearrangement by signed reversals / S. Wu and X. Gu -- DIGIT: a novel gene finding program by combining gene-finders / T. Yada [and others] -- Linking biomedical language, information and knowledge. Session introduction / L. Hirschman [and others] -- Evaluation of the vector space representation in text-based gene clustering / P. Glenisson [and others] -- Playing biology's name game: identifying protein names in scientific text / D. Hanisch [and others] -- Mining terminological knowledge in large biomedical corpora / H. Liu and C. Friedman -- A biological named entity recognizer / M. Narayanaswamy, K.E. Ravikumar, and K. Vijay-Shanker -- Linking biomedical language information and knowledge resources: GO and UMLS / I.N. Sarkar [and others] -- A simple algorithm for identifying abbreviation definitions in biomedical text / A.S. Schwartz and M.A. Hearst -- Human genome variation: haplotypes, linkage disequilibrium, and populations. Session introduction / F.M. De La Vega, K.K. Kidd, and I.S. Kohane -- Selection of minimum subsets of single nucleotide polymorphisms to capture haplotype block diversity / H.I. Avi-Itzhak, X. Su, and F.M. De La Vega -- On the power to detect SNP/phenotype association in candidate quantitative trait loci genomic regions: a simulation study / J.M. Comeron, M. Kreitman, and F.M. De La Vega -- Errors and linkage disequilibrium interact multiplicatively when computing sample sizes for genetic case-control association studies / D. Gordon [and others] -- An MDL method for finding haplotype blocks and for estimating the strength of haplotype block boundaries / M. Koivisto [and others] -- PyPop: a software framework for population genomics: analyzing large-scale multi-locus genotype data / A. Lancaster [and others] -- Joint bayesian estimation of mutation location and age using linkage disequilibrium / B. Rannala and J.P. Reeve -- SNP analysis and presentation in the pharmacogenetics of membrane transporters project / D. Stryke [and others] -- Methods for analysis and visualization of SNP genotype data for complex diseases / A. Tsalenko [and others] |
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Biomedical ontologies. Session introduction / O. Bodenreider, J.A. Mitchell, and A.T. McCray -- Functional discrimination of gene expression patterns in terms of the gene ontology / L. Badea -- Towards a broad-coverage biomedical ontology based on description logics / U. Hahn and S. Schulz -- Evaluation of ontology merging tools in bioinformatics / P. Lambrix and A. Edberg -- Semantic similarity measures as tools for exploring the gene ontology / P.W. Lord [and others] -- Linking molecular imaging terminology to the gene ontology (GO) / P.K. Tulipano, W. Millar, and J.J. Cimino -- A methodology to migrate the gene ontology to a description logic environment using DAML + OIL / C.J. Wroe [and others] -- Special paper. Introduction -- Development under extreme conditions: forensic bioinformatics in the wake of the World Trade Center disaster / H.D. Cash, J.W. Hoyle, and A.J. Sutton |
| Summary |
The Pacific Symposium on Biocomputing (PSB 2003) is an international, multidisciplinary conference for the presentation and discussion of current research in the theory and application of computational methods in problems of biological significance. The rigorously peer-reviewed papers and presentations are collected in this archival proceedings volume. PSB 2003 brings together top researchers from the US, the Asia-Pacific region and around the world to exchange research findings and address open issues in all aspects of computational biology. PSB is a forum for the presentation of work in databases, algorithms, interfaces, visualization, modeling and other computational methods, as applied to biological problems, with emphasis on applications in data-rich areas of molecular biology |
| Bibliography |
Includes bibliographical references |
| Subject |
Biology -- Mathematical models -- Congresses
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Biology -- Computer simulation -- Congresses
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Molecular biology -- Mathematical models -- Congresses
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Molecular biology -- Computer simulation -- Congresses
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NATURE -- Reference.
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SCIENCE -- Life Sciences -- Biology.
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SCIENCE -- Life Sciences -- General.
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Biology -- Computer simulation
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Biology -- Mathematical models
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Molecular biology -- Computer simulation
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Molecular biology -- Mathematical models
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Biocomputer
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Genanalyse
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Kauai <2003>
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| Genre/Form |
Conference papers and proceedings
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| Form |
Electronic book
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| Author |
Altman, Russ.
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| ISBN |
9789812776303 |
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9812776303 |
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