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Author Colombian Congress on Computational Biology and Bioinformatics (2nd : 2013 : Colombia)

Title Advances in computational biology : proceedings of the 2nd Colombian Congress on Computational Biology and Bioinformatics (CCBCOL) / Luis F. Castillo, Marco Cristancho, Gustavo Isaza, Andrés Pinzón, Juan Manuel Corchado Rodríguez, editors
Published Cham : Springer, [2013]
©2014
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Description 1 online resource (xii, 372 pages .)
Series Advances in Intelligent Systems and Computing, 2194-5357 ; v. 232
Advances in intelligent systems and computing ; v. 232. 2194-5357
Contents Predictive modeling of signaling transduction mediated by tyrosine-kinase receptors / Ivan Mura -- Bioinformatic analysis of two proteins with suspected linkage to pulmonary atresia with intact ventricular septum / Oscar Andres Alzate Mejia, Antonio Jesus Perez Pulido -- Construction and comparison of gene co-expression networks based on immunity microarray data from Arabidopsis, rice, soybean, tomato and cassava / Luis Guillermo Leal, Camilo Lopez, Liliana Lopez-Kleine -- In silico binding free energy characterization of cowpea chlorotic mottle virus coat protein homodimer variants / Armando Diaz-Valle, Gabriela Chavez-Calvillo, Mauricio Carrillo-Tripp -- Analysis of binding residues between PDGF-BB and epidermal growth factor receptor : a computational docking study / Ricardo Cabezas [and four others] -- Software as a service for supporting biodiversity conservation decision making / Maria Cecilia Londono-Murcia [and five others] -- Structural and functional prediction of the hypothetical protein Pa2481 in Pseudomonas Aeruginosa Pao1 / David Alberto Diaz, George Emilio Barreto, Janneth Gonzalez Santos -- Exploration of the effect of input data on the modeling of cellular objective in flux balance analysis (FBA) / Carlos Eduardo Garcia Sanchez, Rodrigo Gonzalo Torres Saez -- Prediction of potential kinase inhibitors in Leishmania spp. through a machine learning and molecular docking approach / Rodrigo Ochoa [and four others] -- Functional protein prediction using HMM based feature representation and relevance analysis / Diego Fabian Collazos-Huertas [and four others] -- High throughput location proteomics in confocal images from the human protein atlas using a bag-of-features representation / Raul Ramos-Pollan [and three others] -- Measuring complexity in an aquatic ecosystem / Nelson Fernandez, Carlos Gershenson -- Possible antibiofilm effect of peptides derived from IcaR repressor of Staphylococcus epidermidis responsible for hospital-acquired sepsis / Liliana Munoz [and four others] -- "Head to tail" tool analysis through ClustalW alignment algorithms and construction of distance method neighbor-joining trees based on genus Fusarium genomic distances / Juan David Henao, S. Melissa Rincon, D. Juan Jose Filgueira -- False positive reduction in automatic segmentation system / Jheyson Vargas [and four others] -- Photosynthesis thermodynamic efficiency facing climate change / Victor Alonso Lopez-Agudelo, Julian Ceron-Figueroa, Daniel Barragan -- Thermogenesis driven by ATP hydrolysis in a model with cubic autocatalysis / Julian Ceron-Figueroa, Victor Alonso Lopez-Agudelo, Daniel Barragan -- Towards a linked open data model for coffee functional relationships / Luis Bertel-Paternina [and three others]
Stability analysis of antimicrobial peptides in solvation conditions by molecular dynamics / Daniel Osorio, Paola Rondon-Villarreal, Rodrigo Torres -- Application of genome studies of coffee rust / Marco Cristancho [and eight others] -- In-silico analysis of the active cavity of N-acetylgalactosamine-6-sulfate sulfatase in eight species / Sergio Olarte-Avellaneda, Alexander Rodriguez-Lopez, Carlos Javier Almeciga-Diaz -- Gene predictors ensemble for complex metagenomes / Nestor Diaz, Andres Felipe Ruiz Velazco, Cristian Alberto Olaya Marquez -- Classification of antimicrobial peptides by using the p-spectrum kernel and support vector machines / Paola Rondon-Villarreal, Daniel A. Sierra, Rodrigo Torres -- Genomic relationships among different timor hybrid (Coffea L.) accessions as revealed by SNP identification and RNA-seq analysis / Juan Carlos Herrera [and six others] -- A combined sensitivity and metabolic flux analysis unravel the importance of amino acid feeding strategies in clavulanic acid biosynthesis / Claudia Sanchez [and four others] -- Flux balance analysis and strain optimization for ethanol production in Saccharomyces Cerevisiae / Leon Toro [and three others] -- Domain ontology-based query expansion : relationships types-centered analysis using gene ontology / Alejandra Segura [and three others] -- FS-tree : sequential association rules and first applications to protein secondary structure analysis / Nilson Mossos, Diego Fernando Mejia-Carmona, Irene Tischer -- Presentation and evaluation of ABMS (automatic blast for massive sequencing) / Nelson Enrique Vera Parra, Jose Nelson Perez Castillo, Cristian Alejandro Rojas Quintero -- In silico analysis of iduronate 2 sulfatase mutations in Colombian patients with Hunter syndrome (MPSII) / Johanna Galvis [and four others] -- Phylogenetic analysis of four dung beetle species of neotropical genus Oxyternon (Coleoptera: Scarabaeidae: Scarabaeinae) based on 28S and COI partial regions / Cuadrado-Rios Sebastian [and three others] -- Limits to sequencing and de novo assembly : classic benchmark sequences for optimizing fungal NGS designs / Jose Fernando Munoz [and four others] -- Optimal control for a discrete time influenza model / Paula Andrea Gonzalez Parra [and three others] -- Transcriptomics of the immune system of hydrozoan Hydractinia Symbiolongicarpus using high throughput sequencing methods / Alejandra Zarate-Potes, Luis Fernando Cadavid -- Fuzzy model proposal for the coffee berry borer expansion at Colombian coffee fields / Nychol Bazurto Gomez, Carlos Alberto Martinez Morales, Helbert Espitia Cuchango -- Analysis of structure and hemolytic activity relationships of antimicrobial peptides (AMPs) / Jennifer Ruiz [and three others]
Candidates for new molecules controlling allorecognition in Hydractinia Symbiolongicarpus / Henry J. Rodriguez, Luis Fernando Cadavid -- Escherichia coli's OmpA as biosurfactant for cosmetic industry : stability analysis and experimental validation based on molecular simulations / Sonia Milena Aguilera Segura [and seven others] -- Molecular cloning, modelling and docking with curcumin of the dengue virus 2 NS5 polymerase domain / Leidy Lorena Garcia Ariza [and four others] -- In silico analysis for biomass synthesis under different CO2 levels for Chlamydomonas reinhardtii utilizing a flux balance analysis approach / David Orlando Paez Melo [and three others] -- Analysis of metabolic functionality and thermodynamic feasibility of a metagenomic sample from "El Coquito" hot spring / Maria A. Zamora [and six others] -- Identification of small non-coding RNAs in bacterial genome annotation using databases and computational approaches / Mauricio Corredor, Oscar Murillo -- Structural modeling of Toxoplasma gondii TGME49_289620 proteinase / Mateo Murillo Leon [and four others] -- Diversification of the major histocompatibility complex (MHC) -G and -B loci in New World primates / Juan Sebastian Lugo-Ramos, Luis Fernando Cadavid -- A methodology for optimizing the E-value threshold in alignment-based gene ontology prediction using the ROC curve / Ricardo Andres Burgos-Ocampo [and three others] -- Hydrolytic activity of OXA and CTX-M beta-lactamases against beta-lactamic antibiotics / Ana Rosa Rodriguez Blanco, Maria Teresa Reguero Reza, Emiliano Barreto -- Analysis in silico of 5'-terminal secondary structures of hepatitis C virus sequences genotype 1 from Colombia / Luisa Fernanda Restrepo, Johanna Carolina Arroyave, Fabian Mauricio Cortes-Mancera -- In silico hybridization system for mapping functional genes of soil microorganism using next generation sequencing / Guillermo G. Torres-Estupinan, Emiliano Barreto-Hernandez -- Identification of differently expresed proteins related to drillings fluids exposure in hydractinia symbiolongicarpus by mass spectrometry / Ivan Aurelio Paez-Gutierrez, Luis Fernando Cadavid -- In silico modificiton of cathelicidins generates analogous peptides with improved antimycobacterial activity / Sandra Chingate, Carlos Yesid Soto, Luz Mary Salazar -- Harmonizing protection and publication of research findings in biosciences and bioinformatics / Oscar Lizarazo Cortes, Natalia Lamprea, Gabriel Nemoga Soto -- Mathematical modeling of lignocellulolytic enzyme production from three species of white rot fungi by solid-state fermentation / Sandra Montoya, Oscar Julian Sanchez, Laura Levin -- Bioinformatics tools and data mining for therapeutic drug analysis / Juan Manuel Perez Agudelo, Nestor Jaime Castano Perez, Jhon Fredy Betancur Perez -- iTRAQ, the high throughput data analysis of proteins to understand immunologic expression in insect / Amalia Munoz-Gomez [and three others]
Summary This volume compiles accepted contributions for the 2nd Edition of the Colombian Computational Biology and Bioinformatics Congress CCBCOL, after a rigorous review process in which 54 papers were accepted for publication from 119 submitted contributions. Bioinformatics and Computational Biology are areas of knowledge that have emerged due to advances that have taken place in the Biological Sciences and its integration with Information Sciences. The expansion of projects involving the study of genomes has led the way in the production of vast amounts of sequence data which needs to be organized, analyzed and stored to understand phenomena associated with living organisms related to their evolution, behavior in different ecosystems, and the development of applications that can be derived from this analysis
Notes International conference proceedings
Includes author index
Bibliography Includes bibliographical references and index
Notes Online resource; title from PDF title page (SpringerLink, viewed August 20, 2013)
Subject Computational biology -- Congresses.
Bioinformatics -- Congresses.
Genre/Form Conference papers and proceedings.
Conference papers and proceedings.
Form Electronic book
Author Castillo, Luis F. (Fernando), editor
Cristancho, Marco, editor
Isaza, Gustavo A., editor
Pinzón, Andrés, editor
Corchado, Juan Manuel, editor
LC no. 2013944537
ISBN 3319015672
3319015680 (electronic bk.)
9783319015675
9783319015682 (electronic bk.)
Other Titles CCBCOL