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Author ISBRA (Conference) (11th : 2015 : Norfolk, Virginia)

Title Bioinformatics research and applications : 11th International Symposium, ISBRA 2015 Norfolk, USA, June 7-10, 2015 Proceedings / Robert Harrison, Yaohang Li, Ion Măndoiu (eds.)
Published Cham : Springer, 2015

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Description 1 online resource (xxii, 446 pages) : illustrations
Series Lecture notes in bioinformatics, 0302-9743 ; 9096
LNCS sublibrary. SL 8, Bioinformatics
Lecture notes in computer science. Lecture notes in bioinformatics ; 9096.
LNCS sublibrary. SL 8, Bioinformatics.
Contents Intro; Preface; Symposium Organization; Contents; Deriving Protein Backbone Using Traces Extracted from Density Maps at Medium Resolutions; 1 Introduction; 2 Methods; 3 Results; 4 Conclusions; References; Binary Contingency Table Method for Analyzing Gene Mutation in Cancer Genome; 1 Introduction; 2 Method; 2.1 Binary Contingency Tables; 2.2 BCT-Sampling; 2.3 PBCT-Sampling; 2.4 Computation of; 3 Result; 3.1 Simulation Study; 3.2 Real Data Experiment; 4 Conclusion and Discussion; References; A Filter-Based Approach for Approximate Circular Pattern Matching; 1 Introduction
1.1 Applications and Motivations1.2 Our Contribution; 1.3 Road Map; 2 Preliminaries; 3 Brief Literature Review; 4 Filtering Algorithm; 4.1 Overview of Our Approach; 4.2 Our Filters; 4.3 Reduction of Search Space in the Text; 4.4 The Combined Algorithm; 5 Experimental Results; 6 Conclusions; References; Fast Algorithms for Inferring Gene-Species Associations; 1 Introduction; 2 Basic Definitions and Preliminaries; 2.1 Problems: Resolving Unknown Gene-Species Mappings; 3 Methods; 3.1 Inferring Gene-Species Distributions; 4 Experimental Evaluation; 4.1 Reconstruction Quality and Runtime Analysis
4.2 Empirical Dataset Evaluation5 Conclusion and Future Outlook; References; Couplet Supertree Based Species TreeEstimation; 1 Introduction; 2 Refinement of S into Binary Tree S; 3 Experimental Results; 3.1 Datasets Used; 3.2 Performance Measures; 3.3 Performance Comparison; References; A Novel Computational Method for Deriving Protein Secondary Structure Topologies Using Cryo-EM Density Maps and Multiple Secondary Structure Predictions; 1 Introduction; 2 Methods; 3 Results; 4 Conclusions; References; Managing Reproducible Computational Experiments with Curated Proteinsin KINARI-2
1 Introduction2 Methods and Design; 2.1 System Design; 2.2 Application Design; 2.3 Managing an Experiment; 2.4 Step Design; 3 Results; 4 Conclusion; References; Protein Crystallization Screening Using Associative Experimental Design; 1 Introduction; 2 Background; 2.1 Phase Diagram; 2.2 Hampton Scoring; 3 Proposed Method: Associative Experimental Design(AED); 3.1 Motivation; 3.2 Method; 4 Experiments; 4.1 Dataset; 4.2 Results and Discussion; 5 Conclusion and Future Work; MINED: An Efficient Mutual Information Based Epistasis Detection Method to Improve Quantitative Genetic Trait Prediction
1 Introduction2 Preliminaries; 3 Methods; 3.1 MINED: Mutual Information Based Epistasis Detection; 3.2 Dynamic Significance Threshold; 3.3 Compute Marker Probability; 3.4 Epistasis Detection with Constraints; 4 Experimental Results; 4.1 Maize Data; 4.2 Rice Data; 4.3 Pine Data; 5 Conclusions; References; Domain Adaptation with Logistic Regression for the Task of Splice Site Prediction; 1 Introduction; 2 Related Work; 3 Methods and Materials; 3.1 Logistic Regression with Regularized Parameters; 3.2 Logistic Regression for Domain Adaptation Setting with
Summary This book constitutes the refereed proceedings of the 11th International Symposium on Bioinformatics Research and Applications, ISBRA 2015, held in Norfolk, VA, USA, in June 2015. The 34 revised full papers and 14 two-page papers included in this volume were carefully reviewed and selected from 98 submissions. The papers cover a wide range of topics in bioinformatics and computational biology and their applications
Notes International conference proceedings
Bibliography Includes bibliographical references and author index
Notes Online resource; title from PDF title page (SpringerLink, viewed May 7, 2015)
Subject Bioinformatics -- Congresses
Computational Biology -- methods
Bioinformatics
Genre/Form proceedings (reports)
Conference papers and proceedings
Conference papers and proceedings.
Actes de congrès.
Form Electronic book
Author Harrison, Robert (Computer scientist), editor.
Li, Yaohang, editor
Măndoiu, Ion, editor.
ISBN 9783319190488
3319190482
3319190474
9783319190471
Other Titles ISBRA 2015