<p>Chapter 1: An overview of data mining Chapter 2: Introduction to bioinformatics Chapter 3: Phosphorylation motif discovery Chapter 4: Phosphorylation site prediction Chapter 5: Protein inference in shotgun proteomics Chapter 6: Protein-protein interaction network construction from AP-MS data Chapter 7: Protein complex identification from AP-MS data Chapter 8: Biomarker discovery </p>