Title Plant comparative genomics / edited by Alejandro Pereira-Santana, Samuel David Gamboa-Tuz, Luis Carlos Rodríguez-Zapata

Published New York, NY : Humana Press, [2022]

Click on the following:
Springer eBooks

Copies

Description 1 online resource (1 PDF file (xi, 294 pages)) : illustrations (some color) Series Methods in molecular biology, 1940-6029 ; 2512 Springer protocols Methods in molecular biology (Clifton, N.J.) ; v. 2512. 1064-3745 Springer protocols (Series) 1949-2448 Contents Orthology Prediction and Phylogenetic Analysis Methods in Plants -- Species Tree Inference with SNP Data -- High-Throughput Evolutionary Comparative Analysis of Long Intergenic Non-Coding RNAs in Multiple Organisms -- NGS-Indel Coder v2.0: A Streamlined Pipeline to Code Indel Characters in Phylogenomic Data -- An SGSGeneloss-Based Method for Constructing a Gene Presence/Absence Table Using Mosdepth -- POInT: A Tool for Modeling Ancient Polyploidies Using Multiple Polyploid Genomes -- Searching for Homologous Genes Using Daisychain -- Detecting MicroRNAs in Plant Genomes with miRkwood -- Pangenome Analysis of Plant Transcripts and Coding Sequences -- Metagenomics Bioinformatic Pipeline -- Rhizosphere and Endosphere Bacterial Communities Survey by Metagenomics Approach -- Applying Synteny Networks (SynNet) to Study Genomic Arrangements of Protein-Coding Genes in Plants -- Plant In Situ Hi-C Experimental Protocol and Bioinformatic Analysis -- Isolation of Boechera stricta Developing Embryos for Hi-C -- Discovering the Secrets of Ancient Plants: Recovery of DNA from Museum and Archaeological Plant Specimens -- Use of Allele-Specific Amplification for Rapid Identification of Aromatic and Non-Aromatic Rice Germplasms -- Efficient Protein Extraction Protocols for NanoLC-MS/MS Proteomics Analysis of Plant Tissues with High Proteolytic Activity: A Case Study with Pineapple Pulp Summary This detailed book presents recent methodologies for the task of inspecting the genomic world of plants, extracting valuable information, and presenting it in a readable way. With a focus on bioinformatics tools, the volume explores phylogenetics and evolution, Omics analysis, as well as experimental procedures for trait characterization. Written for the highly successful Methods in Molecular Biology series, chapters include the kind of vital expert implementation advice that will lead to successful results. Authoritative and practical, Plant Comparative Genomics serves as an ideal resource for researchers looking to implement comparative tools in order to explore their genomic data for their daily scientific work Bibliography Includes bibliographical references and index Notes Description based on online resource; title from PDF title page (SpringerLink, viewed February 7, 2023) Subject Plant genomes -- Laboratory manuals Comparative genomics -- Laboratory manuals Plant genetics -- Laboratory manuals Genomes. Plants -- genetics Genomics -- methods Genome Comparative genomics Plant genetics Plant genomes Genre/Form Laboratory manuals Laboratory manuals. Manuels de laboratoire. Form Electronic book Author Pereira-Santana, Alejandro, editor Gamboa-Tuz, Samuel David, editor Rodríguez-Zapata, Luis Carlos, editor ISBN 9781071624296 1071624296

  Permalink