| Description |
1 online resource (xii, 336 pages) : illustrations (some color) |
| Series |
Methods in molecular biology, 1064-3745 ; volume 1533 |
|
Methods in molecular biology (Clifton, N.J.) ; v. 1533. 1064-3745
|
| Contents |
Ensembl Plants: Integrating Tools for Visualizing, Mining and Analyzing Plant Genomics Data -- PGSB/MIPS PlantsDB Database Framework for the Integration and Analysis of Plant Genome Data -- Plant Genome DataBase Japan (PGDBj) -- FLAGdb++: A Bioinformatic Environment to Study and Compare Plant Genomes -- Mining Plant Genomic and Genetic Data Using the GnpIS Information System -- The Bio-Analytic Resource for Plant Biology -- The Evolution of Soybean Knowledge Base (SoyKB) -- Using TropGeneDB: a Database Containing Data on Molecular Markers, QTLs, Maps, Genotypes, and Phenotypes for Tropical Crops -- Species-Specific Genome Sequence Databases: A Practical Review -- A Guide to the PLAZA 3.0 Plant Comparative Genomics Database -- Exploring Plant Co-Expression and Gene-Gene Interactions with CORNET 3.0 -- PlaNet: Comparative Co-Expression Network Analyses for Plants -- Practical Utilization of OryzaExpress and Plant Omics Data Center Databases to Explore Gene Expression Networks in Oryza sativa and Other Plant Species -- Pathway Analysis and Omics Data Visualization using Pathway Genome Databases: FragariaCyc, A Case Study -- CSGRqtl: A Comparative Quantitative Trait Locus Database for Saccharinae Grasses -- Plant Genome Duplication Database -- Variant Effect Prediction Analysis using Resources Available at Gramene Database -- Plant Promoter Database -- Construction of the Leaf Senescence Database and Functional Assessment of Senescence-Associated Genes |
| Summary |
This volume introduces databases containing the results from the recent revolution in sequencing technologies. Chapters in Plant Genomics Databases: Methods and Protocols describe database content, as well as typical use-cases. Some chapters explore databases that primarily present genome sequences focusing on one or a few related species, while others include additional datatypes and/or data from various plant species. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, step-by-step, readily reproducible protocols, and tips on troubleshooting and avoiding known pitfalls. Cutting-edge and comprehensive, Plant Genomics Databases: Methods and Protocols is a valuable resource for providing clear guidance in accessing an important collection of plant databases that can be used to add biological value to genomic data |
| Bibliography |
Includes bibliographical references and index |
| Notes |
Online resource; title from PDF title page (SpringerLink, viewed December 21, 2016) |
| Subject |
Plant genomes -- Databases
|
|
Genomics -- Databases
|
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Gene libraries.
|
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Databases, Genetic
|
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Plants -- genetics
|
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Gene Library
|
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Genomic Library
|
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Botany & plant sciences.
|
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Science -- Life Sciences -- Botany.
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Gene libraries
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Genomics
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Plant genomes
|
| Genre/Form |
Databases
|
|
Laboratory manuals.
|
| Form |
Electronic book
|
| Author |
Dijk, Aalt D. J. van, editor
|
| ISBN |
9781493966585 |
|
1493966588 |
|
1493966561 |
|
9781493966561 |
|
